WebAug 12, 2024 · ATACdb is a powerful platform that provides the most comprehensive accessible chromatin data, QC, TF footprint and various other annotations. View. Show abstract. http://www.licpathway.net/ATACdb/
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WebJan 1, 2024 · In ATACdb, we manually collected over 2200 publicly available human ATAC-seq samples. Notably, we first integrated all sample identifiers (GSM ID) from GEO ( 26) … http://www.licpathway.net/ATACdb/search/search_car_detail.php?car_sample_id=887&car_region_id=7
http://www.licpathway.net/ATACdb/search/search_car_detail.php?car_sample_id=887&car_region_id=2 WebOpen chromatin regions (OCRs) are nucleosome-depleted regions that can be bound by protein factors and can play various roles in DNA replication, nuclear organization, and gene transcription [].Accordingly, they are suitable biomarkers for epigenomic analysis during disease progression particularly in cancer initiation and progression[].In the area of …
WebRegion ID: ATAC_887_5: Biosample name: Jurkat: Tissue type: Blood: Genomic region: chr1:384495-386511: Region length: 2016 bp: Fold change: 6.94232-Log 10 Pvalue:: 15 ... WebNov 8, 2024 · A comprehensive human chromatin accessibility database. Description: The current version of ATACdb documented a total of 52,078,883 regions from over 1,400 chromatin accessibility ATAC-seq samples. These samples have been manually curated from more than 2,200 chromatin accessibility samples associated with ATAC-seq data …
WebATACdb is a powerful platform that provides the most comprehensive accessible chromatin data, QC, TF footprint and various other annotations. News and Updates. 30/8/2024 … ATACdb is a powerful platform that provides the most comprehensive accessible … Sample ID Biosample type Biosample name Tissue type Cancer type Region … Users can submit the ‘Biosample name’s of interest, ATACdb analyze differential … Human reference genome(hg19) Home Data-Browse Search Analysis … Download accessible chromatin region, TF footprint and associated gene for each … Accessible chromatin sample number: 1,493: Super-enhancer sample number: … If you want to share your data, please fill out the necessary information in the form … Principal Investigator: Chunquan Li, Ph.D. School of Medical Informatics,Daqing … ATACdb provides accurate inference of TF footprint within chromatin accessibility … 10/16/2024 Database construction 06/11/2024 The database is online …
WebIn ATACdb, we manually collected over 2200 publicly available human ATAC-seq samples. Notably, we first integrated all sample identifiers (GSM ID) from GEO (26) using the … famous cuban heavyweight boxerWebJan 8, 2024 · ATACdb provides detailed (epi)genetic annotations in chromatin accessibility regions, including super-enhancers, typical enhancers, transcription factors (TFs), … famous cuban inventorsWebJan 8, 2024 · ATACdb provides a large number of chromatin accessibility regions and comprehensive detail information about standardized curation, QC, TF footprint, and … famous cuban musiciansWebATACdb is a powerful platform that provides the most comprehensive accessible chromatin data, QC, TF footprint and various other annotations. famous cuban productsWebRegion ID: ATAC_887_11: Biosample name: Jurkat: Tissue type: Blood: Genomic region: chr1:547095-547780: Region length: 685 bp: Fold change: 3.35400-Log 10 Pvalue:: 6. ... famous cuban lady singerWebPublication. Xu M, Bai X, Ai B, Zhang G, Song C, Zhao J, Wang Y, Wei L, Qian F, Li Y, Zhou X, Zhou L, Yang Y, Chen J, Liu J, Shang D, Wang X, Zhao Y, Huang X, Zheng Y, Zhang J, Wang Q, Li C. TF-Marker: a comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human. cop 28 global newsWebA comprehensive human chromatin accessibility database with the aim of providing a large amount of publicly available resources on human chromatin accessibility data, and to annotate and illustrate potential roles in a tissue/cell type-specific manner. famous cuban food dishes